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1.
Zookeys ; 1196: 177-207, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38566620

RESUMO

Robust keys exist for the family-level groups of Cynipoidea. However, for most regions of the world, keys to genera are not available. To address this gap as it applies to North America, a fully illustrated key is provided to facilitate identification of the tribes and genera of rose gall, herb gall, and inquiline gall wasps known from the region. For each taxon covered, a preliminary diagnosis and an updated overview of taxonomy, biology, distribution, and natural history are provided.

2.
PLoS One ; 19(4): e0298865, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38568873

RESUMO

Haiku are short poems, each composed of about 10 words, that typically describe moments in nature. People have written haiku since at least the 17th century, and the medium continues to be popular with poets, amateurs, educators, and students. Collectively, these poems represent an opportunity to understand which aspects of nature-e.g., which taxa and biological traits-resonate with humans and whether there are temporal trends in their representation or the emotions associated with these moments. We tested this potential using a mix of linguistic and biological methods, in analyses of nearly 4,000 haiku that reference arthropods. We documented the taxa and the life history traits represented in these poems and how they changed over time. We also analyzed the poems for emotion and tone. Our results reveal a mix of predictable trends and compelling surprises, each of which stand to potentially inform engagement strategies. At least 99 families of arthropods, in 28 orders, are represented in these haiku. The eight most commonly referenced taxa, from highest to lowest number of references, include: Lepidoptera, Hymenoptera, Diptera, Coleoptera, Araneae, Orthoptera, Hemiptera, and Odonata. Several common, conspicuous orders were never referenced, including Trichoptera, Plecoptera, and Megaloptera. The most commonly referenced traits relate to ecology (especially habitat, phenology, time of day), behavior (especially sound production), phenotype (especially color), and locomotion (especially flight). The least common traits in haiku relate to arthropod reproduction and physiology. Our analyses revealed few obvious temporal trends in the representations of taxa, biological traits, or emotion and tone. The broader implications of these results and possible future directions are discussed.


Assuntos
Artrópodes , Besouros , Ortópteros , Aranhas , Animais , Humanos , Insetos
3.
Biol Lett ; 19(3): 20220513, 2023 03.
Artigo em Inglês | MEDLINE | ID: mdl-36855854

RESUMO

The morphology of insect-induced galls contributes to defences of the gall-inducing insect species against its natural enemies. In terms of gall chemistry, the only defensive compounds thus far identified in galls are tannins that accumulate in many galls, preventing damage by herbivores. Intrigued by the fruit-like appearance of the translucent oak gall (TOG; Amphibolips nubilipennis, Cynipidae, Hymenoptera) induced on red oak (Quercus rubra), we hypothesized that its chemical composition may deviate from other galls. We found that the pH of the gall is between 2 and 3, making it among the lowest pH levels found in plant tissues. We examined the organic acid content of TOG and compared it to fruits and other galls using high-performance liquid chromatography and gas chromatography-mass spectrometry. Malic acid, an acid with particularly high abundance in apples, represents 66% of the organic acid detected in TOGs. The concentration of malic acid was two times higher than in other galls and in apples. Gall histology showed that the acid-containing cells were enlarged and vacuolized just like fruits mesocarp cells. Accumulation of organic acid in gall tissues is convergent with fruit morphology and may constitute a new defensive strategy against predators and parasitoids.


Assuntos
Malatos , Quercus , Frutas , Herbivoria
4.
Am Nat ; 200(2): 292-301, 2022 08.
Artigo em Inglês | MEDLINE | ID: mdl-35905407

RESUMO

AbstractAnts disperse oak galls of some cynipid wasp species similarly to how they disperse seeds with elaiosomes. We conducted choice assays in field and laboratory settings with ant-dispersed seeds and wasp-induced galls found in ant nests and found that seed-dispersing ants retrieve these galls as they do myrmecochorous seeds. We also conducted manipulative experiments in which we removed the putative ant-attracting appendages ("kapéllos") from galls and found that ants are specifically attracted to kapéllos. Finally, we compared the chemical composition and histology of ant-attracting appendages on seeds and galls and found that they both have similar fatty acid compositions as well as morphology. We also observed seed-dispersing ants retrieving oak galls to their nests and rodents and birds consuming oak galls that were not retrieved by ants. These results suggest convergence in ant-mediated dispersal between myrmecochorous seeds and oak galls. Based on our observations, a protective advantage for galls retrieved to ant nests seems a more likely benefit than dispersal distance, as has also been suggested for myrmecochorous seeds. These results require reconsideration of established ant-plant research assumptions, as ant-mediated seed and gall dispersal appear strongly convergent and galls may be far more abundant in eastern North American deciduous forests than myrmecochorous seeds.


Assuntos
Formigas , Quercus , Dispersão de Sementes , Animais , Plantas , Sementes
5.
Biodivers Data J ; 9: e68558, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34539199

RESUMO

BACKGROUND: Cynipidae (Hymenoptera: Cynipoidea) is a diverse group of wasps, many of which are capable of inducing plants to make galls, novel structures that protect and nourish the wasps' larvae. Other cynipids, especially those species in Ceroptresini and Synergini, are understood to be usurpers of galls made by other cynipids. The North American cynipid fauna has not been fully catalogued since 1979, but there is renewed interest in revising the taxonomy and in doing research that sheds light on the mechanisms of gall induction, the evolution of this life history, and their ecological interactions more broadly. Significant taxonomic changes have impacted the group since 1979, thereby warranting a new catalogue. NEW INFORMATION: The current state of knowledge of species classified in Aulacideini, Ceroptresini, Diastrophini, Diplolepidini, Phanacidini and Synergini in the United States, Canada, and Mexico is summarised in catalogue format. We report 323 names, including 170 valid species of rose gall wasps, herb gall wasps, and inquiline gall wasps, classified in 12 genera, from the United States, Canada, and Mexico. Current taxonomic status, distribution, host associations, and vernacular names are listed for each species. The catalogue also includes the original description of galls for many species of gall-inducer, as well as atomised characterisations of different gall traits as key-value pairs. For most galling species without existing vernacular names, new vernacular names are proposed.

6.
Mol Phylogenet Evol ; 156: 107023, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-33253830

RESUMO

Ichneumonoidea is one of the most diverse lineages of animals on the planet with >48,000 described species and many more undescribed. Parasitoid wasps of this superfamily are mostly beneficial insects that attack and kill other arthropods and are important for understanding diversification and the evolution of life history strategies related to parasitoidism. Further, some lineages of parasitoids within Ichneumonoidea have acquired endogenous virus elements (EVEs) that are permanently a part of the wasp's genome and benefit the wasp through host immune disruption and behavioral control. Unfortunately, understanding the evolution of viral acquisition, parasitism strategies, diversification, and host immune disruption mechanisms, is deeply limited by the lack of a robust phylogenetic framework for Ichneumonoidea. Here we design probes targeting 541 genes across 91 taxa to test phylogenetic relationships, the evolution of parasitoid strategies, and the utility of probes to capture polydnavirus genes across a diverse array of taxa. Phylogenetic relationships among Ichneumonoidea were largely well resolved with most higher-level relationships maximally supported. We noted codon use biases between the outgroups, Braconidae, and Ichneumonidae and within Pimplinae, which were largely solved through analyses of amino acids rather than nucleotide data. These biases may impact phylogenetic reconstruction and caution for outgroup selection is recommended. Ancestral state reconstructions were variable for Braconidae across analyses, but consistent for reconstruction of idiobiosis/koinobiosis in Ichneumonidae. The data suggest many transitions between parasitoid life history traits across the whole superfamily. The two subfamilies within Ichneumonidae that have polydnaviruses are supported as distantly related, providing strong evidence for two independent acquisitions of ichnoviruses. Polydnavirus capture using our designed probes was only partially successful and suggests that more targeted approaches would be needed for this strategy to be effective for surveying taxa for these viral genes. In total, these data provide a robust framework for the evolution of Ichneumonoidea.


Assuntos
Himenópteros/genética , Himenópteros/virologia , Parasitos/fisiologia , Filogenia , Vírus/metabolismo , Animais , Sequência de Bases , Teorema de Bayes , Himenópteros/classificação , Funções Verossimilhança
7.
Zootaxa ; 4792(1): zootaxa.4792.1.1, 2020 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-33056689

RESUMO

We revise the species of Conostigmus Dahlbom, 1858 (Hymenoptera: Ceraphronoidea: Megaspilidae) found in North America, north of Mexico. We describe the following 12 new species: Conostigmus dessarti Trietsch Mikó sp. nov.; C. duncani Trietsch sp. nov.; C. franzinii Trietsch Mikó sp. nov.; C. johnsoni Trietsch Mikó sp. nov.; C. lepus Trietsch sp. nov.; C. longiharpes Trietsch sp. nov.; C. michaeli Trietsch sp. nov.; C. minimus Trietsch Mikó sp. nov.; C. muratorei Trietsch sp. nov.; C. musettiae Trietsch Mikó sp. nov.; C. rosemaryae Trietsch sp. nov.; and C. washburni Trietsch sp. nov. We also redescribe the following 12 species: Conostigmus abdominalis (Boheman, 1832); C. bipunctatus Kieffer, 1907; C. dimidiatus (Thomson, 1858); C. erythrothorax (Ashmead, 1893); C. laeviceps (Ashmead, 1893); C. muesebecki Dessart Masner, 1965; C. nigrorufus Dessart, 1997; C. obscurus (Thomson, 1858); C. orcasensis (Brues, 1909); C. pulchellus Whittaker, 1930; C. quadratogenalis Dessart Cooper, 1975; and C. triangularis (Thomson, 1858). We report specimens of C. abdominalis (Boheman, 1832) and C. bipunctatus Kieffer, 1907 from the Nearctic for the first time, expanding the range from Palearctic to Holarctic for both species. We regard the following 19 species as having uncertain status due to reasons such as missing type specimens: Conostigmus ambiguus (Ashmead, 1893); C. bacilliger (Kieffer, 1906); C. bakeri Kieffer, 1908; C. californicus (Ashmead, 1893); C. canadensis (Ashmead,1888); C. crawfordi (Mann, 1920); C. harringtoni (Ashmead, 1888); C. hyalinipennis (Ashmead, 1887); C. inermis (Kieffer, 1906); C. integriceps (Kieffer, 1906); C. marylandicus (Ashmead, 1893); C. nevadensis (Kieffer, 1906); C. nigripes (Kieffer, 1906); C. ottawensis (Ashmead, 1888); C. pergandei (Ashmead, 1893); C. popenoei (Ashmead, 1893); C. rufoniger (Provancher, 1888); C. schwarzi (Ashmead, 1893); and C. trapezoidus Kieffer, 1908. We transfer Conostigmus arietinus (Provancher, 1887) to Dendrocerus Ratzeburg, 1852, and consider Conostigmus subinermis (Kieffer, 1907) to be absent from the Nearctic and limited to the Palearctic. The Nearctic species C. timberlakei Kamal, 1926 remains incertae sedis. We provide the name Conostigmus fulgidus Mikό and Trietsch to replace the junior homonym Conostigmus lucidus Mikό and Trietsch 2016. We provide a key for the identification of Nearctic Conostigmus species, and provide comments on their natural history. Finally, we infer evolutionary relationships within Megaspilinae using male genitalia and other morphological characters. This work represents the first in-depth study and revision of Conostigmus in North America, and contributes the first annotated identification key to Nearctic Conostigmus species.


Assuntos
Himenópteros , Animais , Evolução Biológica , Masculino
8.
PeerJ ; 7: e6689, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30976469

RESUMO

Ensign wasps (Hymenoptera: Evaniidae) develop as predators of cockroach eggs (Blattodea), have a wide distribution and exhibit numerous interesting biological phenomena. The taxonomy of this lineage has been the subject of several recent, intensive efforts, but the lineage lacked a robust phylogeny. In this paper we present a new phylogeny, based on increased taxonomic sampling and data from six molecular markers (mitochondrial 16S and COI, and nuclear markers 28S, RPS23, CAD, and AM2), the latter used for the first time in phylogenetic reconstruction. Our intent is to provide a robust phylogeny that will stabilize and facilitate revision of the higher-level classification. We also show the continued utility of molecular motifs, especially the presence of an intron in the RPS23 fragments of certain taxa, to diagnose evaniid clades and assist with taxonomic classification. Furthermore, we estimate divergence times among evaniid lineages for the first time, using multiple fossil calibrations. Evaniidae radiated primarily in the Early Cretaceous (134.1-141.1 Mya), with and most extant genera diverging near the K-T boundary. The estimated phylogeny reveals a more robust topology than previous efforts, with the recovery of more monophyletic taxa and better higher-level resolution. The results facilitate a change in ensign wasp taxonomy, with Parevania, and Papatuka, syn. nov. becoming junior synonyms of Zeuxevania, and Acanthinevania, syn. nov. being designated as junior synonym of Szepligetella. We transfer 30 species to Zeuxevania, either reestablishing past combinations or as new combinations. We also transfer 20 species from Acanthinevania to Szepligetella as new combinations.

9.
PeerJ ; 6: e5174, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30140594

RESUMO

Ceraphronoids are some of the most commonly collected hymenopterans, yet they remain rare in the fossil record. Conostigmus talamasi Mikó and Trietsch, sp. nov. from Baltic amber represents an intermediate form between the type genus, Megaspilus, and one of the most species-rich megaspilid genera, Conostigmus. We describe the new species using 3D data collected with synchrotron-based micro-CT equipment. This non-invasive technique allows for quick data collection in unusually high resolution, revealing morphological traits that are otherwise obscured by the amber. In describing this new species, we revise the diagnostic characters for Ceraphronoidea and discuss possible reasons why minute wasps with a pterostigma are often misidentified as ceraphronoids. Based on the lack of ceraphronoid characteristics, we remove Dendrocerus dubitatus Brues, 1937, Stigmaphronidae, and Radiophronidae from Ceraphronoidea and consider them as incertae sedis. We also provide some guidance for their future classification.

10.
Biodivers Data J ; (6): e24173, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-29706790

RESUMO

BACKGROUND: Male genitalia phenotypes of Ceraphron (Jurine, 1807) are informative for species delimitation, but due to their minute size, these characters have not been used extensively. Recent developments in visualisation techniques, e.g. confocal laser scanning microscopy and high resolution bright field imaging, allow for more thorough examination of these minute anatomical structures and the development of a robust, male genitalia-based taxonomic system. We also establish a character set, a template, that will facilitate future revisions of these wasps. NEW INFORMATION: Ceraphron krogmanni sp. nov. is described with outsized male genitalia and multiple diagnostic traits that are unique amongst Ceraphron species.

11.
Biodivers Data J ; (6): e22676, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-29434488

RESUMO

BACKGROUND: A new species, Dendrocerus scutellaris Trietsch & Mikó (Hymenoptera: Megaspilidae), is described here from male and female specimens captured in Costa Rica. This species is the only known ceraphronoid wasp with a straight mandibular surface and raised dorsal projections on the scutellum, called the mesoscutellar comb. It is hypothesised that the function of the mesoscutellar comb is to aid the emergence of the adult from the host, especially since the mandibles lack a pointed surface to tear open the pupal case. The authors also provide phenotypic data in a semantic form to facilitate data integration and accessibility across taxa and provide an updated phenotype bank of morphological characters for megaspilid taxonomic treatments. In updating this phenotype bank, the authors continue to make taxonomic data accessible to future systematic efforts focusing on Ceraphronoidea. NEW INFORMATION: A new species, Dendrocerus scutellaris (Hymenoptera: Megaspilidae) Trietsch & Mikó, is described from both male and female specimens captured in Costa Rica.

12.
Zookeys ; (569): 53-69, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-27110150

RESUMO

Dendrocerus mexicali has been described by Paul Dessart from a single male specimen collected in Mexico. Using 87 newly identified specimens we expand the known range to include the Southwestern United States and Florida, provide an expanded description of the species, and provide the first record of the female. We also use confocal laser scanning microscopy and in vitro hydrostatic pressure changes to investigate the functional morphology of apparently unique basally flexible antennal branches.

13.
PeerJ ; 3: e1470, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26713234

RESUMO

Understanding the interplay between environmental conditions and phenotypes is a fundamental goal of biology. Unfortunately, data that include observations on phenotype and environment are highly heterogeneous and thus difficult to find and integrate. One approach that is likely to improve the status quo involves the use of ontologies to standardize and link data about phenotypes and environments. Specifying and linking data through ontologies will allow researchers to increase the scope and flexibility of large-scale analyses aided by modern computing methods. Investments in this area would advance diverse fields such as ecology, phylogenetics, and conservation biology. While several biological ontologies are well-developed, using them to link phenotypes and environments is rare because of gaps in ontological coverage and limits to interoperability among ontologies and disciplines. In this manuscript, we present (1) use cases from diverse disciplines to illustrate questions that could be answered more efficiently using a robust linkage between phenotypes and environments, (2) two proof-of-concept analyses that show the value of linking phenotypes to environments in fishes and amphibians, and (3) two proposed example data models for linking phenotypes and environments using the extensible observation ontology (OBOE) and the Biological Collections Ontology (BCO); these provide a starting point for the development of a data model linking phenotypes and environments.

14.
PLoS Biol ; 13(1): e1002033, 2015 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-25562316

RESUMO

Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across many key fields in biology, including genomics, systems biology, development, medicine, evolution, ecology, and systematics. Here we survey the current phenomics landscape, including data resources and handling, and the progress that has been made to accurately capture relevant data descriptions for phenotypes. We present an example of the kind of integration across domains that computable phenotypes would enable, and we call upon the broader biology community, publishers, and relevant funding agencies to support efforts to surmount today's data barriers and facilitate analytical reproducibility.


Assuntos
Estudos de Associação Genética , Animais , Biologia Computacional , Curadoria de Dados , Bases de Dados Factuais/normas , Interação Gene-Ambiente , Genômica , Humanos , Fenótipo , Padrões de Referência , Reprodutibilidade dos Testes , Terminologia como Assunto
15.
PLoS One ; 9(5): e94056, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24787704

RESUMO

We revise two relatively rare ensign wasp genera, whose species are restricted to Sub-Saharan Africa: Afrevania and Trissevania. Afrevania longipetiolata sp. nov., Trissevania heatherae sp. nov., T. hugoi sp. nov., T. mrimaensis sp. nov. and T. slideri sp. nov. are described, males and females of T. anemotis and Afrevania leroyi are redescribed, and an identification key for Trissevaniini is provided. We argue that Trissevania mrimaensis sp. nov. and T. heatherae sp. nov. populations are vulnerable, given their limited distributions and threats from mining activities in Kenya. We hypothesize that these taxa together comprise a monophyletic lineage, Trissevaniini, tr. nov., the members of which share the ability to fold their fore wings along two intersecting fold lines. Although wing folding of this type has been described for the hind wing of some insects four-plane wing folding of the fore wing has never been documented. The wing folding mechanism and the pattern of wing folds of Trissevaniini is shared only with some cockroach species (Blattodea). It is an interesting coincidence that all evaniids are predators of cockroach eggs. The major wing fold lines of Trissevaniini likely are not homologous to any known longitudinal anatomical structures on the wings of other Evaniidae. Members of the new tribe share the presence of a coupling mechanism between the fore wing and the mesosoma that is composed of a setal patch on the mesosoma and the retinaculum of the fore wing. While the setal patch is an evolutionary novelty, the retinaculum, which originally evolved to facilitate fore and hind wing coupling in Hymenoptera, exemplifies morphological exaptation. We also refine and clarify the Semantic Phenotype approach used in previous taxonomic revisions and explore the consequences of merging new with existing data. The way that semantic statements are formulated can evolve in parallel, alongside improvements to the ontologies themselves.


Assuntos
Baratas/anatomia & histologia , Vespas/anatomia & histologia , Asas de Animais/anatomia & histologia , Animais , Feminino , Masculino , Fenótipo , Vespas/classificação
16.
Syst Biol ; 62(5): 639-59, 2013 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-23652347

RESUMO

Taxonomic descriptions are unparalleled sources of knowledge of life's phenotypic diversity. As natural language prose, these data sets are largely refractory to computation and integration with other sources of phenotypic data. By formalizing taxonomic descriptions using ontology-based semantic representation, we aim to increase the reusability and computability of taxonomists' primary data. Here, we present a revision of the ensign wasp (Hymenoptera: Evaniidae) fauna of New Caledonia using this new model for species description. Descriptive matrices, specimen data, and taxonomic nomenclature are gathered in a unified Web-based application, mx, then exported as both traditional taxonomic treatments and semantic statements using the OWL Web Ontology Language. Character:character-state combinations are then annotated following the entity-quality phenotype model, originally developed to represent mutant model organism phenotype data; concepts of anatomy are drawn from the Hymenoptera Anatomy Ontology and linked to phenotype descriptors from the Phenotypic Quality Ontology. The resulting set of semantic statements is provided in Resource Description Framework format. Applying the model to real data, that is, specimens, taxonomic names, diagnoses, descriptions, and redescriptions, provides us with a foundation to discuss limitations and potential benefits such as automated data integration and reasoner-driven queries. Four species of ensign wasp are now known to occur in New Caledonia: Szepligetella levipetiolata, Szepligetella deercreeki Deans and Mikó sp. nov., Szepligetella irwini Deans and Mikó sp. nov., and the nearly cosmopolitan Evania appendigaster. A fifth species, Szepligetella sericea, including Szepligetella impressa, syn. nov., has not yet been collected in New Caledonia but can be found on islands throughout the Pacific and so is included in the diagnostic key.


Assuntos
Classificação/métodos , Modelos Biológicos , Semântica , Vespas/classificação , Animais , Nova Caledônia , Especificidade da Espécie , Vespas/anatomia & histologia
17.
J Morphol ; 274(7): 793-808, 2013 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-23508988

RESUMO

eScience is a new approach to research that focuses on data mining and exploration rather than data generation or simulation. This new approach is arguably a driving force for scientific progress and requires data to be openly available, easily accessible via the Internet, and compatible with each other. eScience relies on modern standards for the reporting and documentation of data and metadata. Here, we suggest necessary components (i.e., content, concept, nomenclature, format) of such standards in the context of zoomorphology. We document the need for using data repositories to prevent data loss and how publication practice is currently changing, with the emergence of dynamic publications and the publication of digital datasets. Subsequently, we demonstrate that in zoomorphology the scientific record is still limited to published literature and that zoomorphological data are usually not accessible through data repositories. The underlying problem is that zoomorphology lacks the standards for data and metadata. As a consequence, zoomorphology cannot participate in eScience. We argue that the standardization of morphological data requires i) a standardized framework for terminologies for anatomy and ii) a formalized method of description that allows computer-parsable morphological data to be communicable, compatible, and comparable. The role of controlled vocabularies (e.g., ontologies) for developing respective terminologies and methods of description is discussed, especially in the context of data annotation and semantic enhancement of publications. Finally, we introduce the International Consortium for Zoomorphology Standards, a working group that is open to everyone and whose aim is to stimulate and synthesize dialog about standards. It is the Consortium's ultimate goal to assist the zoomorphology community in developing modern data and metadata standards, including anatomy ontologies, thereby facilitating the participation of zoomorphology in eScience.


Assuntos
Anatomia/métodos , Mineração de Dados , Disseminação de Informação , Anatomia/normas , Animais , Mineração de Dados/normas , Bases de Dados Factuais , Internet , Vocabulário Controlado
18.
PLoS One ; 8(2): e55674, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23441153

RESUMO

Hymenoptera, the insect order that includes sawflies, bees, wasps, and ants, exhibits an incredible diversity of phenotypes, with over 145,000 species described in a corpus of textual knowledge since Carolus Linnaeus. In the absence of specialized training, often spanning decades, however, these articles can be challenging to decipher. Much of the vocabulary is domain-specific (e.g., Hymenoptera biology), historically without a comprehensive glossary, and contains much homonymous and synonymous terminology. The Hymenoptera Anatomy Ontology was developed to surmount this challenge and to aid future communication related to hymenopteran anatomy, as well as provide support for domain experts so they may actively benefit from the anatomy ontology development. As part of HAO development, an active learning, dictionary-based, natural language recognition tool was implemented to facilitate Hymenoptera anatomy term discovery in literature. We present this tool, referred to as the 'Proofer', as part of an iterative approach to growing phenotype-relevant ontologies, regardless of domain. The process of ontology development results in a critical mass of terms that is applied as a filter to the source collection of articles in order to reveal term occurrence and biases in natural language species descriptions. Our results indicate that taxonomists use domain-specific terminology that follows taxonomic specialization, particularly at superfamily and family level groupings and that the developed Proofer tool is effective for term discovery, facilitating ontology construction.


Assuntos
Biodiversidade , Himenópteros/anatomia & histologia , Himenópteros/classificação , Animais , Análise por Conglomerados , Bases de Dados Factuais , Humanos , Internet , Software
19.
Database (Oxford) ; 2013: bas057, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23303300

RESUMO

Matching is an important step for increasing interoperability between heterogeneous ontologies. Here, we present alignments we produced as domain experts, using a manual mapping process, between the Hymenoptera Anatomy Ontology and other existing arthropod anatomy ontologies (representing spiders, ticks, mosquitoes and Drosophila melanogaster). The resulting alignments contain from 43 to 368 mappings (correspondences), all derived from domain-expert input. Despite the many pairwise correspondences, only 11 correspondences were found in common between all ontologies, suggesting either major intrinsic differences between each ontology or gaps in representing each group's anatomy. Furthermore, we compare our findings with putative correspondences from Bioportal (derived from LOOM software) and summarize the results in a total evidence alignment. We briefly discuss characteristics of the ontologies and issues with the matching process.


Assuntos
Mineração de Dados , Himenópteros/anatomia & histologia , Algoritmos , Animais
20.
Zookeys ; (223): 1-38, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-23166458

RESUMO

The Neotropical evaniid genus Evaniscus Szépligeti currently includes six species. Two new species are described, Evaniscus lansdownei Mullins, sp. n. from Colombia and Brazil and Evaniscus rafaeli Kawada, sp. n. from Brazil. Evaniscus sulcigenis Roman, syn. n., is synonymized under Evaniscus rufithorax Enderlein. An identification key to species of Evaniscus is provided. Thirty-five parsimony informative morphological characters are analyzed for six ingroup and four outgroup taxa. A topology resulting in a monophyletic Evaniscus is presented with Evaniscus tibialis and Evaniscus rafaeli as sister to the remaining Evaniscus species. The Hymenoptera Anatomy Ontology and other relevant biomedical ontologies are employed to create semantic phenotype statements in Entity-Quality (EQ) format for species descriptions. This approach is an early effort to formalize species descriptions and to make descriptive data available to other domains.

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